DreEX0030264 @ danRer10
Exon Skipping
Gene
ENSDARG00000060054 | epc1b
Description
enhancer of polycomb homolog 1 (Drosophila) b [Source:ZFIN;Acc:ZDB-GENE-090609-1]
Coordinates
chr2:43774587-43777400:+
Coord C1 exon
chr2:43774587-43774732
Coord A exon
chr2:43774940-43774975
Coord C2 exon
chr2:43777194-43777400
Length
36 bp
Sequences
Splice sites
3' ss Seq
CATGTGTATTCATTCAACAGATG
3' ss Score
8.49
5' ss Seq
AAGGTATAC
5' ss Score
7.64
Exon sequences
Seq C1 exon
CGTTCAGTCTGGACACAGAACAGCCGGATTATGACCTGGACTCTGAGGATGAGGCGTTTGTAAATAAGCTGAAGAAGAAGATGGATGTGGGGGCTCTGCAGTTTGAAGAGATGATAGACCGGCTGGAGAAAGGCAGTGGACAGCAG
Seq A exon
ATGCTTTTATCCAAAGCGACTTGCATTGCATTGAAG
Seq C2 exon
CCTGTGACTCTGCAGGAGGCCAAACTGTTGTTGAAGGAGGATGACGAGCTGATCAAGGAGGTGTTTGAGTATTGGAGCAAAAAGAGGAAAACATGTCAGAGCGGCTCTCTCATCCCTGTCGTCAAACAAGAGAAGCGTGACGGATCCAGCACCAATGACCCGTACGTGGCCTTCAGGCGCCGGACAGAGAAGATGCAGACACGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060054_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.170 A=0.000 C2=0.401
Domain overlap (PFAM):
C1:
PF105134=EPL1=PD(30.6=89.8)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAAAGGCAGTGGACAGCAG
R:
GCCGCTCTGACATGTTTTCCT
Band lengths:
126-162
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]