DreEX0030972 @ danRer10
Exon Skipping
Gene
ENSDARG00000077666 | evi5a
Description
ecotropic viral integration site 5a [Source:ZFIN;Acc:ZDB-GENE-110218-2]
Coordinates
chr2:10951480-10976229:+
Coord C1 exon
chr2:10951480-10951626
Coord A exon
chr2:10957036-10957113
Coord C2 exon
chr2:10975085-10976229
Length
78 bp
Sequences
Splice sites
3' ss Seq
AGTGTTTCTCTTGTCTCCAGTGG
3' ss Score
7.69
5' ss Seq
CAAGTATGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
AATGAAATTCACAGAAACCAACTCAAGCGAACTGAAGCGCATGTGAGCAGCCAGCGAGATCATCTACAGGAACTGACATCACACAACAAAGATCTGCACAGCCAATTACAGCAGATCAGATGCCACTTTTTAGCTGTTCAAAACAAG
Seq A exon
TGGAAAGGAAACGAAGATGGAGATGCAGGAAACTTGATCGAACGTCTTCAAAAGCAGATCACTGAGTTACAAATTCAA
Seq C2 exon
ATTCAGACTTTCTCCAAGTGTGCTCCGTCATCTTGTCAACCCTCCACATCCGCCTCTCTGGAGCACAAGGACACCTAAAAATGGCCCTTGCGCCCAGCCGTCCCGGCACTCTGGCTCCAGCCGCACACTGTAGAGCTCGACCCACATGCTGCAGCATCCACTGATTCACACTCGAACACACTGCAACACATCGAGTGTCATGAGCACACACACTGTCAGTTTTGACACTTCAATGTGACAAGATTTTCTCTTTCTTAGATCTTAGATTCTTAAAATGTCAAGTACTTTGCAAAGAGAAACTGCTGTTATTTACTGATTGTCAGCCATGAATATCGTACTCCTGAATCCTGAAAATTCAGAGCAACAGAGATTACAGCAGAATGAGTGTGTGTTTGAGTGATTTCCTCGCCGCTGTAAAAGTCACAGATTTAGTAGACAGTAAATTGCAAGTTATAAGAGGGACGACATGGTGACTCAGTGGTTAGCACTGTTGCCTCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077666_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.583 A=0.308 C2=0.560
Domain overlap (PFAM):
C1:
PF054676=Herpes_U47=PD(32.6=61.2)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCCAGCGAGATCATCTAC
R:
TGTCCTTGTGCTCCAGAGAGG
Band lengths:
174-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]