DreEX0032783 @ danRer10
Exon Skipping
Gene
ENSDARG00000051768 | fhod1
Description
formin homology 2 domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-110623-4]
Coordinates
chr7:34340697-34342725:+
Coord C1 exon
chr7:34340697-34340865
Coord A exon
chr7:34342176-34342250
Coord C2 exon
chr7:34342552-34342725
Length
75 bp
Sequences
Splice sites
3' ss Seq
TGGCTCCTTTGATCTCACAGAGG
3' ss Score
8.1
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
Exon sequences
Seq C1 exon
ACAGAAAAGTTTTCTGGAGCAGTTACAGAGCTGTCTCTGGATAGCAGCCCATCCCCAGTGTTTTCAGCAGTAGAATCAGAGCCAGCCCAGGAAGAGCATGAAAACATGAAAAACCTGCTCATCGCCAACAACGACAACAAGCTGCTGCGCCGGAGCCGTGCTGTACGAA
Seq A exon
AGGAGCCTTGTGACTCTGACAGCGCTCATACTTCACCAGTAGAGAGCCAGTCAGCACGGGATGAGGATGATGAAG
Seq C2 exon
GTGTGGGCAGGCTAAGCACACACATGTCTGTAGCCAAAGAGGACAGCGCCAGCTCACAGGACGATGCCACAGATGAGATCATGGATCGTCTGGTAAAGTCTGTCACCCAGAATCCCACAGAGAGAGCGTCTAGTCCAAAAACACGGAAACGCTCGCGGCTTAACCGAAAGTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000051768_MULTIEX2-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.554 A=1.000 C2=0.980
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSDART00000073447fB2760
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATCCCCAGTGTTTTCAGCA
R:
CGCTGTCCTCTTTGGCTACAG
Band lengths:
169-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]