DreEX0032797 @ danRer10
Exon Skipping
Gene
ENSDARG00000063682 | fhod3a
Description
formin homology 2 domain containing 3a [Source:ZFIN;Acc:ZDB-GENE-060503-633]
Coordinates
chr19:741272-746842:+
Coord C1 exon
chr19:741272-741486
Coord A exon
chr19:745036-745317
Coord C2 exon
chr19:746792-746842
Length
282 bp
Sequences
Splice sites
3' ss Seq
CAATAACTCATCTTCATCAGCGG
3' ss Score
1.66
5' ss Seq
CAGGTAGAG
5' ss Score
7.1
Exon sequences
Seq C1 exon
GCGACGCTCCGTCATGAGGATGGAGATGAAGACGGTTTGCCTCCATCCTGCGGTCGGCGGGACAGACGGAGGTCCAGTGTGGGTGGAGAGAGGCGGGGCTTGGAAAGACGCCGCAGCCGCAGGCATTCATTGGGCAGACCAGGCCACGCCTCCCCGCTCAGTCCCGCCTCCCCACACCGCACCAACATCAAGCTGATGAACGGACAGGATGAGAG
Seq A exon
CGGCAGTGGTAAATCATCCCTCTGTAACAAACACACCACAGAAGAAGAGGAGAAGAAGAGGGCCACATCCTCAGCCCTGCCCCCTGCTGACTCCGCCCAGCCCTCAGTCTTGGCCAATCTGTTGGCTCGCCGCAGGTCATCTGTCACTGTGCCGTCGACCAATCAGATCAGTCCTCCGCAGCGGCCGCTGGACCGCCTGCCGTATCTGCCACACTCCCCATTCTTCCTCTTCTCATACGACATGGAGGAGCAGGAGGAGAAACCAGACGAGAAGAACAGCAG
Seq C2 exon
GTCTCTTTCTGCTGTCGGTTCTCCATCTACACCTACTAAACAGAACGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063682_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.965 A=0.916 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSDART00000093281fB2763
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGCTCCGTCATGAGGATG
R:
CTCTCGTTCTGTTTAGTAGGTGT
Band lengths:
263-545
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]