DreEX0032819 @ danRer10
Exon Skipping
Gene
ENSDARG00000060393 | fibcd1
Description
fibrinogen C domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-070424-245]
Coordinates
chr5:33542440-33585344:-
Coord C1 exon
chr5:33584891-33585344
Coord A exon
chr5:33549883-33549966
Coord C2 exon
chr5:33542440-33542919
Length
84 bp
Sequences
Splice sites
3' ss Seq
TGTTTGTTTGTTTGATGCAGACG
3' ss Score
7.9
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
CTTGAATGTAGCTGGTGTGGAATACATGAAGACTTTATAACGCCGCGGAAGGAAAGAAAAACGGCTCAGAGAACAACTTTACGGAAGACTAAGGAGTTTATTTATTACTGTTTCCTTATCAAGTACGTATGATATTACCATGTGTGTGGGGCGAGAGTCTTCGCCGCCCCTTTTAGACCAGAATTAGTCAGTGTGGTCCCGGAGTAGAGGCTAAATCAGTGTCTTCTCGATCTCGCGCACGCTCCTCACCATTCTTTTCCTTACCCCAGCGGTTATTTATTTCCATGGAATAACTGAATCGGGAAACGACTGAACGACAAGGAGTTTTTTTTCCCACCGCCTGTAACTGACAGGCGGTTTAGGGTTGGCTCTTCTCCGGAGAATGCTCAATGATCGATGGGGAATCATGAACAGCTCACCGGAACTCGAAGACGGACAGCGGGGCAAAAACCAG
Seq A exon
ACGTTCTGTGAGTGTGTGCCAAACTCCCCTCAGCTCAAACATCGCTGGTCAGACTCAGACACAGTCAGACAAACAGCGCCCAAG
Seq C2 exon
AGGATGAGTTGTAGCTATCTGCTATGTACCATCTTGCTCTTCGTGGCCGTTCTGCTCGCAGTCACAGTGACAGGAACCATTCTTCTTATGAACCACTACCAGGCTCCCCCTATGTCGGACGGCCCGCCCCATATTAGCACCAATCAGGACGAAGCCAATGCACTGGTGACAGTCGAGAGGGGTGATGGATCACGCATCAATATCTTCATCGACCCCAACTGTCCTGATTATAACAGTAACTTCCTGCGGCTGGAAGGTGTGCAGACGTCTTTGCTGCACTCGCTCACTGACCACGATACGGATCTCAAGTCTGTCAAAGGTCAGGATCGAGCGCTATTGGTCAACTTGGCAGAGGAAGTTGCTAAGCTGTCTGCTCATGCGGGGCAGCTGAAGATGGACTATGAATCTCTCAGAAGAGGACAAAGCAACCTGGGACAGGACCTGAATACACTGCAGACTGAACAAAGCAGACTTATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060393_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.250 C2=0.188
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSDART00000146321fB2771
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTCCCACCGCCTGTAACTG
R:
GCCACGAAGAGCAAGATGGTA
Band lengths:
173-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]