DreEX0033182 @ danRer10
Exon Skipping
Gene
ENSDARG00000036156 | fnbp1a
Description
formin binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-081105-105]
Coordinates
chr8:11569467-11578289:-
Coord C1 exon
chr8:11578185-11578289
Coord A exon
chr8:11575043-11575057
Coord C2 exon
chr8:11569467-11569595
Length
15 bp
Sequences
Splice sites
3' ss Seq
TTTTTTAACATGTCTTAAAGCGG
3' ss Score
4.98
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
AGTAAGAGAAGATTTGAGAGAGACTGTAAGGAAGCGGATCGCGCCCAGCATTACTTTGACAAGATGGACGCGGACATTAACGTGACTAAAGCTGATGTGGAAAAG
Seq A exon
CGGTGTTCTCTCAAG
Seq C2 exon
GCGAAACAGCAAGCTCAGATGAGGCATCAGATAGCAGAGGACAGTAAAAACGAGTACCTGACCTACCTGCAGAAATTCAACAAGGACCAACATGAACACTACTACACACTCATACCACACATCTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036156-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.114 A=0.400 C2=0.248
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGCGGACATTAACGTGACT
R:
GCAGGTAGGTCAGGTACTCGT
Band lengths:
109-124
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]