DreEX0033185 @ danRer10
Exon Skipping
Gene
ENSDARG00000101028 | fnbp1b
Description
formin binding protein 1b [Source:ZFIN;Acc:ZDB-GENE-091117-6]
Coordinates
chr21:6223953-6230994:+
Coord C1 exon
chr21:6223953-6224057
Coord A exon
chr21:6227409-6227423
Coord C2 exon
chr21:6230866-6230994
Length
15 bp
Sequences
Splice sites
3' ss Seq
CTTTAAATCATGCCCTGAAGCGA
3' ss Score
1.93
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
TGTAAGCGGAAATTCGAGCGAGATTGTAAAGAAGCTGATCGAGCCCAGCAGTACTTCGAGAAGATGGATGCAGACATCAACGTGACGAAAGCAGATGTAGAGAAG
Seq A exon
CGATGTTACCTAAAG
Seq C2 exon
GCACGGCAGCAGGCTCAGATGAGGCACCAGATGGCTTCTGACAGCAAGAGCGAATATTCCTCATACCTGCAGAAGTTCAACCAGGAACAGAACGAACATTATTACACCATCATCCCTAATATTTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101028-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.147 A=0.000 C2=0.369
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSDART00000161647fB2807
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCCAGCAGTACTTCGAGAA
R:
GCTCTTGCTGTCAGAAGCCAT
Band lengths:
115-130
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]