DreEX0033189 @ danRer10
Exon Skipping
Gene
ENSDARG00000101028 | fnbp1b
Description
formin binding protein 1b [Source:ZFIN;Acc:ZDB-GENE-091117-6]
Coordinates
chr21:6272200-6280365:+
Coord C1 exon
chr21:6272200-6272358
Coord A exon
chr21:6277848-6277883
Coord C2 exon
chr21:6280160-6280365
Length
36 bp
Sequences
Splice sites
3' ss Seq
TTGTGGATGTTTCCTCGCAGAGC
3' ss Score
8.82
5' ss Seq
AGGGTGAGA
5' ss Score
6.65
Exon sequences
Seq C1 exon
GTCATAACGAAGGCACGATTGCAATAACAGAGGGTGAGCTCTTGTACGTAATAGAGGAAGACAAAGGTGACGGATGGACGCGTGTTAGAAGAAATGAAGAGGAGGAAGGTTACGTTCCCACATCCTACGTCGAGGTCTTTCTGGACTCCAACGCCAAAG
Seq A exon
AGCTGTTTTCCTGGAGAAGGGTTTATCTTTCTGAGG
Seq C2 exon
ATTCGTAAAGTATGGAAGGAGGACTCAGTGGTGCAGGGCAAACAGCAGCCGCATGTTGGAGAAACTACAGCCAAGGAGAGACAGACACAAAATACAGAAATGAAACCAGAGCGACAGGCTCTAGAGACTCTGTAGAGTGTGACATTAACAGTGACATCAGAGAAATATGACGACTTTTAGATTTATTATGACCTGTGTGTTATTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101028_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.764 A=0.000 C2=0.375
Domain overlap (PFAM):
C1:
PF146041=SH3_9=PD(86.3=81.5)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSDART00000161647fB2809
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTCGAGGTCTTTCTGGACT
R:
TGTCTGTCTCTCCTTGGCTGT
Band lengths:
120-156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]