DreEX0033702 @ danRer10
Exon Skipping
Gene
ENSDARG00000018506 | ftr03
Description
finTRIM family, member 3 [Source:ZFIN;Acc:ZDB-GENE-070912-225]
Coordinates
chr2:42435057-42449857:+
Coord C1 exon
chr2:42435057-42435221
Coord A exon
chr2:42441325-42441403
Coord C2 exon
chr2:42449624-42449857
Length
79 bp
Sequences
Splice sites
3' ss Seq
ATATTTTCTCTTTTTTTCAGTAC
3' ss Score
9.64
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
AGAGCTTTGGAAGAATCTAGGGTAGGAGAAAAAACATTACAGGAAGAAGTATGCAGCTTGAGGAAGGAGCTACTTGCCATGCAAACTTCGCTTGATTCCTTTATGCAGCAGAGGATCTCACTTGACACCAAAGTAGATGAAAAGGTTCATGTTTCTGGGTCTCAG
Seq A exon
TACTGACCTCCATCCAGCCCTAATTAAGTACAGCAGCGGAACCAGCTGATCAAGATCACCAAGATTACAGAAACTGCAG
Seq C2 exon
CGCTCTGCACAGGCAGCAGTGGAGGACACTGAGAGAATCTTTACTGAGCTCATACGCTCCAATGAGAGAACCCGCTCTGAGGTGACACAGCTGATCAGAGATCAGGAAAAGGCTTCAGTGAGTGTAGCTGAAGGACGACTGGAGCAACTGGAGCAGGAGATGAATGATCTGAATAGGAAAAATACTGAGCTGGTGCAGCTTTCATGCACTGACAATCACATCCATTTCCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000018506_MULTIEX1-3/6=2-C2
Average complexity
C3
Mappability confidence:
83%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.443
Domain overlap (PFAM):
C1:
NA
A:
PF097274=CortBP2=PD(0.1=0.0)
C2:
PF104554=BAR_2=FE(60.6=100),PF143621=DUF4407=FE(45.0=100)
Main Inclusion Isoform:
ENSDART00000101230fB2846
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCCATGCAAACTTCGCTTG
R:
AGAGCGGGTTCTCTCATTGGA
Band lengths:
170-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]