DreEX0034287 @ danRer10
Exon Skipping
Gene
ENSDARG00000090183 | gapvd1
Description
GTPase activating protein and VPS9 domains 1 [Source:ZFIN;Acc:ZDB-GENE-040718-117]
Coordinates
chr8:34436556-34440995:-
Coord C1 exon
chr8:34440908-34440995
Coord A exon
chr8:34440274-34440306
Coord C2 exon
chr8:34436556-34436627
Length
33 bp
Sequences
Splice sites
3' ss Seq
TGTCTGTGTTCCTCACACAGTGC
3' ss Score
8.9
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
TCTGAGGACAGGAAGGACAGTGATGATGAGAAGTCTGATAGGAACAGACCCTGGTGGAAGAAGCGCTTTGTTCCTGCCATTCCTAAAG
Seq A exon
TGCTCTATTGGACGGCAGAGGGTGAACTCCCAG
Seq C2 exon
TGCCGATTGCCGGGCTTCGGAAGCGGGACAAGGCAGAAAAAGACGAGCAAGGAGCAGAGAGGGTCCCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000090183_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.767 A=0.083 C2=0.990
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSDART00000112854fB2887
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGACAGGAAGGACAGTGA
R:
TTTTTCTGCCTTGTCCCGCTT
Band lengths:
127-160
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]