DreEX0034457 @ danRer10
Exon Skipping
Gene
ENSDARG00000035555 | gbgt1l3
Description
globoside alpha-1,3-N-acetylgalactosaminyltransferase 1, like 3 [Source:ZFIN;Acc:ZDB-GENE-040912-46]
Coordinates
chr5:23348342-23349321:-
Coord C1 exon
chr5:23349274-23349321
Coord A exon
chr5:23348631-23348660
Coord C2 exon
chr5:23348342-23348479
Length
30 bp
Sequences
Splice sites
3' ss Seq
AAGTCTTATTTATTTTACAGGCT
3' ss Score
7.15
5' ss Seq
GGGGTAAGA
5' ss Score
7.83
Exon sequences
Seq C1 exon
TATAACAAAAAAGAGCTCGGAAAATGTTCTCTTGCAGTCGCCTCAAGG
Seq A exon
GCTTAAATATAATCAGCCCAGTGTATTGGG
Seq C2 exon
CCCAGATGGCAAAGTTGGTCCTCTGGCACCATGGTTAGCTCCAATTGTTTCTGAAGGAAGTTTTGATCCCACACTGATTGATGCAATCTACAAACAACAGAACATTACAGTAGCAACCACCATCTTTGCTCTTGGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035555-'3-4,'3-3,4-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF034148=Glyco_transf_6=FE(5.1=100)
A:
PF034148=Glyco_transf_6=FE(3.2=100)
C2:
PF034148=Glyco_transf_6=FE(14.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATGTTCTCTTGCAGTCGCCT
R:
TGCATCAATCAGTGTGGGATCA
Band lengths:
112-142
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]