DreEX0035200 @ danRer10
Exon Skipping
Gene
ENSDARG00000077249 | gmip
Description
GEM interacting protein [Source:ZFIN;Acc:ZDB-GENE-130530-823]
Coordinates
chr3:52539360-52546639:+
Coord C1 exon
chr3:52539360-52539687
Coord A exon
chr3:52542845-52542947
Coord C2 exon
chr3:52545911-52546639
Length
103 bp
Sequences
Splice sites
3' ss Seq
AATTCTTATCATTTTAACAGAAT
3' ss Score
7.28
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GGTGGCCGAACAATTCGAGGACAACAAGATGTCTCCAGGAAACCTGGGTATTGTATTTGGGCCGACGCTCCTGCGGCCCCTAGTATCTGGAGATGTATCTATGATCGCGCTTCTGGAAACCAGCTATCAAGCCCTCCTGGTGGAGTTCATGATCTCCAACTATGACCAAGTATTCGGTTCCGCCACGAGATCCGGCACACCTCCGCCACCTCCACCCACAGCACCGCTCCCAGAAACTCCACCCAGAGCAACCTGTCCTGTTTCTCCATCCAGCAGCTCCTCTCAGGACCCCACAGCCACGTCTAGAGAACGTCCGCGCTCACTGGAG
Seq A exon
AATCGCACTATCAAGAGAGATTCAAGCGAAGGTTATATTTCTGACAAGTCCTCATCCAATGAAGCAATGGACCAGCTGAGCCCAGAAGCCAATGAGAGAGCAG
Seq C2 exon
TCCTGGCTATGAGTGCCACGGCATCTCCTCAAGGGCTTCCGGGACAGGCTGCAGAAAATCAACTACAAACTCGCTCCAGGACTCACCTCAGCAGGCAGCCGGTCAAGTACTACAGACAGGGTTCAGCAGGAGCGCAGTCACGGAAAACAAGCGCTCAGTTGAGGGACGAGAACATTTCTGTGAGCGGAGAAGGACTCGTATCTGGAAGTGCAGATAGTAGTCGCAGCTCTTCTCCTGAGCCCTTAAAAACTCTCCTCTGCCTACAGGAGACCGTAGTCCCACAGGATAAGACAGAGAGTCAGACTGGAGCTCATGCAGGGGTGCAGAGGACAGTTTCACAGGAGTCCGTTCAAGCAGGAGCGTCTTCATTTGTCAGAGAAGGTAACACAAACCAGTCCAACAACACCCTACGGGGCAGAGAGCGCCTGATTCGCTCCTTGAGGAGGCGCTCTGTTGAAGAGAAAACGTCCCAGAAGGTGCTGTCTGGACTTAGGCTGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077249_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=1.000 C2=0.930
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=PD(18.9=28.2)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACTCCACCCAGAGCAACC
R:
CAACTGAGCGCTTGTTTTCCG
Band lengths:
257-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]