DreEX0036393 @ danRer10
Exon Skipping
Gene
ENSDARG00000045481 | gsap
Description
gamma-secretase activating protein [Source:ZFIN;Acc:ZDB-GENE-041210-216]
Coordinates
chr4:20494077-20495783:-
Coord C1 exon
chr4:20495679-20495783
Coord A exon
chr4:20495381-20495427
Coord C2 exon
chr4:20494077-20494154
Length
47 bp
Sequences
Splice sites
3' ss Seq
CAAACACTTATGTTTGACAGTTT
3' ss Score
4.76
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GTGATGCAGAATTCAGAGCGTCTGAGCAGAGAGAGAGTGGCAGAGGAGTTCATATGGGTCCAGTGGGACTCAGACACTCAAAGAATATTCTACCTTACTGCACGG
Seq A exon
TTTGAGCTTCCATTGGAGATGCCCAACATTGTCACTTCTCCTGTGAG
Seq C2 exon
GAACCATGTGTGTGTGCTACAGCCATCCAGTGCGCTGGCATAAGGACGCCACATATACTATTGCATTTGTGCACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045481_MULTIEX1-2/3=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSDART00000132464fB3060
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATGCAGAATTCAGAGCGT
R:
GATGGCTGTAGCACACACACA
Band lengths:
132-179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]