DreEX0036437 @ danRer10
Exon Skipping
Gene
ENSDARG00000011459 | gsna
Description
gelsolin a [Source:ZFIN;Acc:ZDB-GENE-030131-9653]
Coordinates
chr21:17543831-17550536:-
Coord C1 exon
chr21:17550446-17550536
Coord A exon
chr21:17548515-17548541
Coord C2 exon
chr21:17543831-17544001
Length
27 bp
Sequences
Splice sites
3' ss Seq
TATCCAACATCCTGCTGTAGATG
3' ss Score
5.81
5' ss Seq
CAGGTATCC
5' ss Score
7.91
Exon sequences
Seq C1 exon
GCAGGGGGCAGACTCTACACAGGATGAGATCGGGGCATCTGCTATCTTGGGTGCCCAGCTGGATGATGAGCTTGGAGGTGGACCTGTGCAG
Seq A exon
ATGGCTGGTGCTCCCCTTACTACTCAG
Seq C2 exon
GTGCGTGTGGTCCAGGGTAAAGAACCTGCTCACCTCATGAGTCTATTCGGTGGGCAGCCTATGGTGGTACACAAGGGTGGCACCTCCAGAGAAGGTGGTCAGACGGCGCCAGCAGAGACTCGGCTGTTCCAAGTGCGCTCAAATTCAGCAGGGTGCACTCGAGCTGTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000011459_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=0.222 C2=0.333
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=FE(36.1=100)
A:
PF0062617=Gelsolin=FE(8.7=100)
C2:
PF0062617=Gelsolin=PD(14.5=21.1),PF0062617=Gelsolin=PU(12.0=10.5)
Main Inclusion Isoform:
ENSDART00000168495fB3064
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCTGCTATCTTGGGTGCCC
R:
ATAGGCTGCCCACCGAATAGA
Band lengths:
118-145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]