DreEX0037670 @ danRer10
Exon Skipping
Gene
ENSDARG00000039987 | hivep2a
Description
human immunodeficiency virus type I enhancer binding protein 2a [Source:ZFIN;Acc:ZDB-GENE-041014-354]
Coordinates
chr20:37630136-37692479:-
Coord C1 exon
chr20:37692408-37692479
Coord A exon
chr20:37690389-37690454
Coord C2 exon
chr20:37630136-37630288
Length
66 bp
Sequences
Splice sites
3' ss Seq
TTTCTGCATCCTGGCTGCAGGTC
3' ss Score
8.89
5' ss Seq
TAGGTGAAC
5' ss Score
2.97
Exon sequences
Seq C1 exon
CCCATCCAAGAATTGCAAGTGCATCCGTTCTCCCATGCTGCCGGTTTCCATGGTGTTGAGGATCTGTAGCGG
Seq A exon
GTCTGTATTTCTCTTCCCCATCGAGATCAGGATCTTTCCCCTGTGTGATGTCACATGCAGATCTAG
Seq C2 exon
TGGTCTGCATAATCTCAGCACCCTGGCCAGGGGAACTTACTTGTCACCCCATCGCCAAGTCTTCGCCTGCCTAACTTAACTCCTATTGAGGAAGTAACACCAGGACTTTACCCTGAGAAACAAGCCGATCGCCGACTTACAGAAAACTTTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000039987_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTTTCCATGGTGTTGAGGA
R:
TTTCTGTAAGTCGGCGATCGG
Band lengths:
176-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]