DreEX0037671 @ danRer10
Exon Skipping
Gene
ENSDARG00000075928 | hivep3a
Description
human immunodeficiency virus type I enhancer binding protein 3a [Source:ZFIN;Acc:ZDB-GENE-081029-2]
Coordinates
chr19:15426881-15456873:-
Coord C1 exon
chr19:15456799-15456873
Coord A exon
chr19:15434829-15434902
Coord C2 exon
chr19:15426881-15430998
Length
74 bp
Sequences
Splice sites
3' ss Seq
TATGACTCACTCGCTCTCAGCCT
3' ss Score
5.7
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GTGACATTGAGCCCAGAGTTTTCTCCTTTGACGCAGGGAACAGGATTTTCAGACAGAGCCACCTGGAGTACACTG
Seq A exon
CCTCACAGCCTTCACTCAAAACCTGACCGCTCTCACATATTAGCAAGGCTGAAGAGGAGACCTGCAGCTATCAG
Seq C2 exon
AATTCCAATCTCTGAAGTGGATCATCTGTCAACCATATTTGGAACATAAAGCATCTGCAGAACACAGAAATTGAGAACCAGACAGAGCATTCATGGAAAAGCCTAGCTATTTTGGATTTCTAAGAACAAGAAAGAACAAGAAACAGGACAGACAAAAGTTTTCACTTTAACTGATAAGTTGTAGCTGTGTTTTATATAATTCATTGGAAGAAGCTCTTCTACCATCAAGCAATAATGCATACAGAACATTTCAGCTATGACCAACATGTAAAACCCTTGCGTATGTTGAATGGAACAAGGTATTATGCAGTTCTCTGAATTCATTGAATCAATTGGTCATTCATACAGTCTGGAATAAATAGCACCTTAGGCTTTCATCCCATTTTATGGAGGCTTTGCATAGCCAGGCGACCACTGGGGAGCAATCTGGAGGTTTAGCAAAGCAGAATGAGACCCCAGTGGATAACCCTAAGCCACAGTATCATGAAGAGAAAAAGGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075928-'2-3,'2-2,3-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.710
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=2.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTTTCTCCTTTGACGCAGGG
R:
AGCTAGGCTTTTCCATGAATGCT
Band lengths:
167-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]