DreEX0038059 @ danRer10
Exon Skipping
Gene
ENSDARG00000103862 | hoxa3a
Description
homeobox A3a [Source:ZFIN;Acc:ZDB-GENE-000823-3]
Coordinates
chr19:20189232-20205177:+
Coord C1 exon
chr19:20189232-20189362
Coord A exon
chr19:20201745-20201802
Coord C2 exon
chr19:20204619-20205177
Length
58 bp
Sequences
Splice sites
3' ss Seq
TGCTTTTTTTCTTGTCGTAGATT
3' ss Score
9.19
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
TTCGTTTTCTTTCTCTGTAGACCGTAGAGGTGTTTCTTGACTGCACCAGCAACTGCTTCTAACAAGCCAGATTGCTATGGACTGGAAACGCACCGACCGGATTTACTCGGGCGACCGAGGGCCAGCTCTTG
Seq A exon
ATTTTCCAACAAATGAATGTGCCTCAGTACTAAAACAACGGGAGCTGTATCGTTTAAG
Seq C2 exon
GTTTACCCGTAGAGCCCATTGGCGAAGAGGTGTCACGTGACTACGTTGAGCCAATGTTCTTCTACAAAGGTGTCAGGACCTTGTCAGAAAGTGAAATAAACATTGGGAAACGGCGAGATGCAAAAGGCAACCTACTGCGACGGCTCGGCAATTTACAGTGGCCTCCCTTATCAAAGCGCAAACGGTTTAGGTTATGATGCCAGTCAGCAGCAGTATCTCCAGGCCCTTCATGCGGAAAGTGAGTACCATCGACCGGCCTGCTCTCTGCAGTCCCCTGGTATATCTGCAGGTCTGCACACATCCAATGAAATGTCCGAGGTCTGCCAACAAATTAACGGAACACAAGCTACAGTAACAGACACCTCCGACAACAAACAGCCCCCTACTGCCCCTTCTGGACCATCGTCCCCCAGTTCCCTGAATCAAATTCCAAACATTGATTCCGCCGCCAAGAATCCAGTCCACGTATCACCAACACCATCCACAAGGAAACACATTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103862_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.696
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTTCTTGACTGCACCAGC
R:
GTGACACCTCTTCGCCAATGG
Band lengths:
138-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]