DreEX0038064 @ danRer10
Exon Skipping
Gene
ENSDARG00000056030 | hoxb7a
Description
homeobox B7a [Source:ZFIN;Acc:ZDB-GENE-000329-2]
Coordinates
chr3:23561299-23565432:+
Coord C1 exon
chr3:23561299-23561722
Coord A exon
chr3:23563855-23563927
Coord C2 exon
chr3:23564954-23565432
Length
73 bp
Sequences
Splice sites
3' ss Seq
TTGACTTTGGTCATGTTTAGAAG
3' ss Score
5.2
5' ss Seq
GGGGTATTT
5' ss Score
3.64
Exon sequences
Seq C1 exon
ATGAGTTCATTGTATTATGCGAACGCGCTGTTTTCCAAATACCAAGTGGCGAGTTCAGCCTTCTCTACTGGCGTGTTTCCCGAGCAAACTTCTTGCGCCTTTTCGTGCAGTTCGCAGCGGGCCAGCGGCTACGGCTCGGCTTCAACCGGTGCACCGGTCTCTTCATCATCTTCTGTCTCCCTGCCGAGCATGTACACTAACGGTACTAGTCTTTCCAGTCATACTCAAGGCATGTACCCCACTGCGTATGAGCTGGGAGCTGTCTCTTTGAACATGCACAGCTCTCTGTTTGACCATCCGAATCTACCCATGGTGAGCGCTGGCGATCTCTGTAAAGCGCAAAGCAGTGGCAAGGAAGAGCAGAGGGGCTACCATCAAAACAACGAAAACAACCTCCGAATCTACCCGTGGATGAGGAGCACAG
Seq A exon
AAGGAAGTCTGAACGCCAGAGCTCCATTAGAGTCACGGGAGAGTGCAAGCCAGAGAATACACGTACAGCAGGG
Seq C2 exon
GTGCTGACCGGAAAAGAGGCCGTCAGACCTATTCCCGCTACCAAACATTAGAGCTGGAGAAAGAGTTTCACTTCAACCGTTACCTTTCAAGACGGCGGCGTATCGAGATAGCACACGCCCTGTGCTTAACCGAGCGCCAGATCAAAATTTGGTTTCAAAACAGGAGAATGAAATGGAAGAAAGAGAACAAATCAACGGACCGCTGCTCGCCTGCTGCTGATCAAATTGGAGGCGACGAGGAAGAAGAAGATGATGAGTAGCAACGCAAGTTGAAGACATAATAAGACTATACTAAAATATTATTGATTTGACTTGCTTTAATTCGGGATACACTGAATAAAAAAGTTGATACTTACAATACTGTAGGCAACGTGTCTTTATCGTCTATGTAACTTATGTTAGAGATGTTAATGTGCTAAACTATTAAATATAATACTACGAACTATTTTAAAACATTTTAATATAGATGTATAAACTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056030_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.208 A=0.840 C2=0.363
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0004624=Homeobox=WD(100=65.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCGAATCTACCCGTGGAT
R:
ATTTTGATCTGGCGCTCGGTT
Band lengths:
180-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]