DreEX0040318 @ danRer10
Exon Skipping
Gene
ENSDARG00000014655 | itpr1a
Description
inositol 1,4,5-trisphosphate receptor, type 1a [Source:ZFIN;Acc:ZDB-GENE-070604-3]
Coordinates
chr6:39969875-39974454:+
Coord C1 exon
chr6:39969875-39969986
Coord A exon
chr6:39974078-39974125
Coord C2 exon
chr6:39974328-39974454
Length
48 bp
Sequences
Splice sites
3' ss Seq
CGCTCTGCTCACTCACTCAGGTG
3' ss Score
8.36
5' ss Seq
AGGGTAGGT
5' ss Score
8.1
Exon sequences
Seq C1 exon
GTTGATAAAACACACTAAGCAGCTTCTAGAAGAAAACGAAGAGAGGCTTTGCATCAAAGTCCTTCAGACACTCCGAGAGATGATGACCAAAGACAGAGGATATGGAGAGAAG
Seq A exon
GTGGTGGATATCAGTCTGCCACCCAAACAGCAGGAGGATCGGCAGAGG
Seq C2 exon
GGGGAGGCCCTTCGGCAGCTGCTCGTCAATCGTTACTATGGCTTCAGGAGTGGTGGGCGGAGAGAAAGTCTGACCTCGTTTGGTAACTCCACCCTAACTCCTGTCGGGCCAATCAAGAGCCAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014655_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.688 C2=0.163
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAAGAGAGGCTTTGCATCA
R:
CCCACCACTCCTGAAGCCATA
Band lengths:
134-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]