DreEX0040339 @ danRer10
Exon Skipping
Gene
ENSDARG00000074149 | itpr1b
Description
inositol 1,4,5-trisphosphate receptor, type 1b [Source:ZFIN;Acc:ZDB-GENE-070604-2]
Coordinates
chr11:35700342-35703688:-
Coord C1 exon
chr11:35703644-35703688
Coord A exon
chr11:35703520-35703549
Coord C2 exon
chr11:35700342-35700496
Length
30 bp
Sequences
Splice sites
3' ss Seq
GTTTCTGTTTCCTGCTTCAGGTG
3' ss Score
10.95
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
GTCAATCCTGACTATGAGGAAGAATCGCAGGAATCCCGTTCATCT
Seq A exon
GTGGCAGATTTTTCACCCTTTAACTTCCAG
Seq C2 exon
CTGGACTCTGAACATGAGGCTCTGCGAGCTCGTCTGCGCACGCCCAATGAGAAGGTCATGTACTCACTGGTGTCTGTGCCTGATGGCAATGACATTTCCTCTATATTTGAGCTGGACCCCACCACTCTCAGAGGAGGAGACTCACTCGTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074149_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.733 A=0.000 C2=0.077
Domain overlap (PFAM):
C1:
PF0281514=MIR=FE(6.6=100)
A:
PF0281514=MIR=FE(4.2=100)
C2:
PF0281514=MIR=FE(24.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGAATCGCAGGAATCCCG
R:
CATCAGGCACAGACACCAGTG
Band lengths:
113-143
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]