DreEX0040355 @ danRer10
Exon Skipping
Gene
ENSDARG00000061741 | itpr3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:ZFIN;Acc:ZDB-GENE-070605-1]
Coordinates
chr8:21248275-21252469:+
Coord C1 exon
chr8:21248275-21248689
Coord A exon
chr8:21250718-21250788
Coord C2 exon
chr8:21252348-21252469
Length
71 bp
Sequences
Splice sites
3' ss Seq
CCATGTGTTTACCTTCCCAGGCT
3' ss Score
8.07
5' ss Seq
GAGGTATTT
5' ss Score
7.63
Exon sequences
Seq C1 exon
GCGTGTTTTGACTTGACAAAGTTGCGCGTGCTTCCTGGTTTGAAGCGCTGTGACCTCAGGTACGCCGCAAAACTCCAACAACGAGCCACTTCTGCTGCTCCTCGGACATCTGTGCTCCACGCTCCCAGCTGCACACCCGACCAGGGATTACACGTTTGCTGTTTTCTTCAAAATTCCCAGCTCTGCCGAGATGCATTTAAACTTTAACTGTGGCTGAAGCGCGTGCCTCCACCCGCTTTATCAGGAAGAGTTTGAGAGTAAAGTGTCCGGGCTTCTTAAGAACAAACTCAAGCAAGCACCCATCTTCGCATTGAAAGGCAAAGATGTCCGATTCGGCGTCTAGTTTTCTCCATATCGGGGATATTGTGTCCCTGTATGCAGAAGGAACTGTCAATGGTTTTATAAGCACACTGGG
Seq A exon
GCTGGTGGATGACCGTTGTGTCGTGGAGCCTGCAAGTGGAGATTTAGAAAACCCTCCCAAAAAATTCAGAG
Seq C2 exon
ACTGCCTCTTTAAGGTGTATCCCATGAACAGATATTCGGCTCAGAAACAGTTCTGGAAAGCCAAACAGGCCAAACATGAAAAGGATAAAATTGGAGACATGGTGCTTCTTCAGAAATTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061741-'2-4,'2-3,3-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.080 C2=0.000
Domain overlap (PFAM):
C1:
PF087096=Ins145_P3_rec=PU(12.6=87.1)
A:
PF087096=Ins145_P3_rec=FE(11.2=100)
C2:
PF087096=Ins145_P3_rec=FE(18.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAACTCAAGCAAGCACCCA
R:
TGAGCCGAATATCTGTTCATGGG
Band lengths:
177-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]