DreEX0040366 @ danRer10
Exon Skipping
Gene
ENSDARG00000061741 | itpr3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:ZFIN;Acc:ZDB-GENE-070605-1]
Coordinates
chr8:21279582-21280451:+
Coord C1 exon
chr8:21279582-21279702
Coord A exon
chr8:21280064-21280075
Coord C2 exon
chr8:21280398-21280451
Length
12 bp
Sequences
Splice sites
3' ss Seq
CTTCTTCGTGTTTGTCTCAGAGC
3' ss Score
9.42
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
Exon sequences
Seq C1 exon
TTCATCCTCAGCGTTCGTCTAGACTATCGGCTTTCGTTCCTCCTCTCCGTCTTCAAGAAGGAGTTTGTGGATGTTTATCCTATGGAAGATGCAGATGCCACACATCATACTGAGCATGAGG
Seq A exon
AGCATCGTTCTG
Seq C2 exon
CTTCCATCAACCTACAGCACATTGGAGAGCAGGCAGAGGCCATGTTTGGAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061741-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.154 A=1.000 C2=0.188
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSDART00000142836fB3354
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGATGCAGATGCCACACA
R:
CAATTCCAAACATGGCCTCTGC
Band lengths:
92-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]