DreEX0041111 @ danRer10
Exon Skipping
Gene
ENSDARG00000059653 | kdm2aa
Description
lysine (K)-specific demethylase 2Aa [Source:ZFIN;Acc:ZDB-GENE-061215-144]
Coordinates
chr1:44157143-44158023:+
Coord C1 exon
chr1:44157143-44157229
Coord A exon
chr1:44157485-44157643
Coord C2 exon
chr1:44157997-44158023
Length
159 bp
Sequences
Splice sites
3' ss Seq
CTTGTTTCCCTGTGTGCCAGTCG
3' ss Score
7.1
5' ss Seq
AGGGTGAGA
5' ss Score
6.65
Exon sequences
Seq C1 exon
ACGTCTGGTGAGGGAGTGGTGAACAAAGACCTGCCGAGCTGCTGGGAGTGTCCCAAGTGTGTTTTGGGAAAAGACACCGATTCTGAG
Seq A exon
TCGTCAGGCAGCGGTGATGACATCACGGCACAGGATGGGTCAGGGGGGCGAGGGGGCGAGGGCGGGGCGTGGCATGGGGTCGGGCGGCCCCCCTCTTCTCTCTCTCACGGCTCGCTCCAGAAACGGGCAGCAGCCCCTGAGCAGCGGCTCAGGAAGAGG
Seq C2 exon
ATTAAACTGGATGGTGGTAAATCACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059653_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=0.972 C2=0.964
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PD(11.6=16.7),PF0062824=PHD=PD(41.8=76.7)
A:
PF041477=Nop14=PU(4.5=22.2)
C2:
PF041477=Nop14=FE(3.4=100)
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTCTGGTGAGGGAGTGG
R:
ATGTGATTTACCACCATCCAGT
Band lengths:
114-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]