DreEX0041127 @ danRer10
Exon Skipping
Gene
ENSDARG00000036593 | kdm2ba
Description
lysine (K)-specific demethylase 2Ba [Source:ZFIN;Acc:ZDB-GENE-040426-2195]
Coordinates
chr8:40214636-40236406:-
Coord C1 exon
chr8:40236358-40236406
Coord A exon
chr8:40231237-40231557
Coord C2 exon
chr8:40214636-40214902
Length
321 bp
Sequences
Splice sites
3' ss Seq
CAAATGTGTGTTCTTTGTAGGAA
3' ss Score
9.09
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
Exon sequences
Seq C1 exon
GTGCGTCAAAACACGCGCTTGGAACCTGTATGATAAATCACTTAATAAG
Seq A exon
GAAAGCCTGTAACTGGATGCCAGGAGGTCTGTGATTGGCTGAGCCCAGGCCCCCCTCTCCCTCTTGGTCTTCTGTTTCTGGTGCATATGCATGAGATTTAGCAGGCTGCTGTGTGCCTGTGCAGCTGCCCGTTCCAGACAGGAAAAGAGAGAGAGGGAGAACCAGGAGCGAGAAGAAGACGGATAAAGAAAGGAAGAGCGCTATTGTGGGCTTGTAGCCATGTCTGCGTTGTGTTTGTTTGCTTTGCTATAAGATCAGATGGCCATGGCCATGTCACTAAGCGCAGACGATGAGGATTACGATTCGGACACAGCCGAACAG
Seq C2 exon
CAACAGCTACCCAACAAACCCAAACCTAAAATGGCTACATCAACAGCCACAACTCCATCAGCGACCACTTCTTCATCCACTGCAACGGCAGTCAAGCTGCCATCCAATCGAACCTCCTCCGGAGCCCGACGCAGACGTACACGATGCCGGAAGTGCGAGGCATGCGTGCGGACAGAATGTGGAGAGTGTCACTTCTGCAAGGATATGAAAAAGTTTGGAGGCCCCGGTCGAATGAAACAGTCTTGCATCATGAGGCAATGCATTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036593_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.468
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0200815=zf-CXXC=WD(100=52.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAAAACACGCGCTTGGAAC
R:
CAATGCATTGCCTCATGATGC
Band lengths:
310-631
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]