DreEX0042401 @ danRer10
Exon Skipping
Gene
ENSDARG00000071462 | lama3
Description
laminin, alpha 3 [Source:ZFIN;Acc:ZDB-GENE-050208-475]
Coordinates
chr22:16363432-16363950:-
Coord C1 exon
chr22:16363823-16363950
Coord A exon
chr22:16363617-16363755
Coord C2 exon
chr22:16363432-16363536
Length
139 bp
Sequences
Splice sites
3' ss Seq
TTCCTATTTTCTGCTCCTAGAGG
3' ss Score
8.21
5' ss Seq
GAGGTGACT
5' ss Score
5.88
Exon sequences
Seq C1 exon
CCTCCAGTGGAGCTTCAGTACCAGGGATTCAAGGGCTGTATTGAGTTTTCTTCAATAAATGATCAAATCCTCGGCTTATACAACTTTCAACGTGCTGTCAACATAACCAAAAATGACCTGTGTCAAAG
Seq A exon
AGGGAAAGTCCGCACATTGGGGGATTATTTCGATGGCACGGGTTTTGGAAAAGTGGATATATTAAGCCAGAATTCTTTCATTAAGTTTTTTGTTCTGAGTCATCAAATGGATGCTGTGCTTTTTTACATGGGAAATGAG
Seq C2 exon
AACTCGTACTTCTTCATTACACTGGAAGGAGGCTATATTGTTTTGCGAGGTGTAAACAATGACGCGATCATTTTTGAAAGGTCCAACGTTAAAGTATTTCCTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000071462-'20-21,'20-20,21-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0221019=Laminin_G_2=PD(15.0=48.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAGCTTCAGTACCAGGGA
R:
TGAGGAAATACTTTAACGTTGGACCT
Band lengths:
226-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]