DreEX0042480 @ danRer10
Exon Skipping
Gene
ENSDARG00000002084 | lamb2
Description
laminin, beta 2 (laminin S) [Source:ZFIN;Acc:ZDB-GENE-081030-4]
Coordinates
chr23:20270537-20274368:-
Coord C1 exon
chr23:20274205-20274368
Coord A exon
chr23:20273867-20273902
Coord C2 exon
chr23:20270537-20270761
Length
36 bp
Sequences
Splice sites
3' ss Seq
TCCCCTTCAACTGGACACAGGGA
3' ss Score
4.01
5' ss Seq
ATCGTGAGT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GTGTGCTAATGGCTACTATGGTAACCCAGTCCTTGGTTTAGGGAGTCAGTGTCGGCCCTGCCCCTGTCCTGAGGGCCCCAACAGCGGACGCCACTTTGCTGCCTCTTGTTACCAAGACAACCGAAGCCAACAGGTGGTCTGCAACTGCAACCAGGGTTACACAG
Seq A exon
GGACTGTAAAGCGCTCTGCAGGGGCAGTCCTCAATC
Seq C2 exon
GTCCACGTTGTGATGAATGTGCTCCTGGCTATTTTGGTGACCCGTCTAAGCCCGGTGGGCAGTGCCAGCCATGTCGTTGCAGTAATAACATCGACCTGTCAGATCCTGAGTCTTGTGACAAGCGCACTGGCCAGTGTCTGAAGTGCCTGTACAACACTGAAGGGCCAGACTGTAGTGTGTGCAGGAGCGGATACTATGGAGACGCTTCTCGACGCAACTGCCGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000002084_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(35.4=30.4),PF0005319=Laminin_EGF=PU(61.4=62.5)
A:
NO
C2:
PF0005319=Laminin_EGF=PD(36.8=27.6),PF0005319=Laminin_EGF=WD(100=65.8)
Main Inclusion Isoform:
ENSDART00000147326fB3518
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACTTTGCTGCCTCTTGTT
R:
CGGGTCACCAAAATAGCCAGG
Band lengths:
119-155
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]