DreEX0043685 @ danRer10
Exon Skipping
Gene
ENSDARG00000029146 | lrp1ab
Description
low density lipoprotein receptor-related protein 1Ab [Source:ZFIN;Acc:ZDB-GENE-030131-7126]
Coordinates
chr23:25529016-25532090:-
Coord C1 exon
chr23:25531997-25532090
Coord A exon
chr23:25529769-25529807
Coord C2 exon
chr23:25529016-25529160
Length
39 bp
Sequences
Splice sites
3' ss Seq
TGCATCTCTCTGTCTCTCAGGTC
3' ss Score
10.99
5' ss Seq
GCGGTAACT
5' ss Score
6.77
Exon sequences
Seq C1 exon
ATACTCCATCTGTGGTCATCCCGGTGATGTTACTACTCTTACTTGCACTGTTGGTGGTCGCTGCCATCTTGTGGTACAAGAAGAGAATGCGTGG
Seq A exon
GTCTGTGATGCGGGGCAAGCCCAGCTCCAGATGTTCGCG
Seq C2 exon
TGCTAAGGGATTCCAGCACCAGAGGATGACCAATGGAGCCATGAATGTAGAGATCGGGAACCCGGCGTACAAGATTTATGAAGGAGAACCCGATGATGATGCAGGGGAGCTGCTGGACTCGGACTTCACACTGGATCCAGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000029146_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.163
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSDART00000088208fB3634
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGTGGTCATCCCGGTGAT
R:
CCATTGGTCATCCTCTGGTGC
Band lengths:
123-162
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]