DreEX0044250 @ danRer10
Exon Skipping
Gene
ENSDARG00000028533 | macf1a
Description
microtubule-actin crosslinking factor 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3606]
Coordinates
chr19:35582995-35588138:-
Coord C1 exon
chr19:35587986-35588138
Coord A exon
chr19:35585550-35585561
Coord C2 exon
chr19:35582995-35583149
Length
12 bp
Sequences
Splice sites
3' ss Seq
TGTCTGCGGGGCTGGGCAAGGCC
3' ss Score
-2.21
5' ss Seq
CAGGTACTA
5' ss Score
7.64
Exon sequences
Seq C1 exon
GAGGAGAAAGAACAATTGATTGAATACCGCAGCACAGTGGCCAGTCTTGTAGGTCGGGCCAAATCTGTAGTCCAGCTCCGGCCACGCAGTGCAGACAGTAACCTGGGCACCACCACACCCATTCGTGCCATCTGTGACTATCGACAAATAGAG
Seq A exon
GCCAACTCTCAG
Seq C2 exon
ATCACCATCAGCAAAGGCGAGGAGTGTGTCCTGGAGGATAACTCTCAGAGGACCAAGTGGAAGGTCATCAGTCCTACTGGAAATGAGGCCATGGTGCCATCTGTGTGTTTCACCGTTCCTCCCCCTAATCAGGAAGCCATCGACACTGCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000028533-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.000 C2=0.381
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTGCAGACAGTAACCTGG
R:
CACTCCTCGCCTTTGCTGATG
Band lengths:
94-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]