DreEX0045227 @ danRer10
Exon Skipping
Gene
ENSDARG00000000394 | matr3l1.1
Description
matrin 3-like 1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-40]
Coordinates
chr14:24788120-24790304:-
Coord C1 exon
chr14:24790176-24790304
Coord A exon
chr14:24789970-24790017
Coord C2 exon
chr14:24788120-24788242
Length
48 bp
Sequences
Splice sites
3' ss Seq
ACATTATGTTTTTTTTTTAGCCA
3' ss Score
8.66
5' ss Seq
AATGTAATT
5' ss Score
1.5
Exon sequences
Seq C1 exon
GCCTTTCTGGAGCTTGCCAATGAGCAAGAAGCAAAAGCAATGGTTAATTTCTACAGTGGAAATGTCTTGCCATCTGTGTGTGGGAAACCTGTGAGGGTTTATCATTCACACACCTATGCAACCATCCAG
Seq A exon
CCACGGATTGGACCATTTTTCGGATCAGCCAAAAAGGAGGAGACAAAT
Seq C2 exon
AGCGGCAGAGTCATCTACATTGGAAATGTTCCAGCCTTCAAAGGCCCTGATTCACAACTTCTGAAACTCGCAGAGCCATATGGAAAAATTAGGAGATACTATCTGAACCGAATGCGAAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000394_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138931=RRM_5=PD(60.3=81.4)
A:
NO
C2:
PF138931=RRM_5=PU(36.8=51.2)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCATCTGTGTGTGGGAAAC
R:
GGCTCTGCGAGTTTCAGAAGT
Band lengths:
139-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]