DreEX0045569 @ danRer10
Exon Skipping
Gene
ENSDARG00000058372 | mcph1
Description
microcephalin 1 [Source:ZFIN;Acc:ZDB-GENE-060421-6122]
Coordinates
chr13:6181274-6183534:-
Coord C1 exon
chr13:6183497-6183534
Coord A exon
chr13:6181827-6181896
Coord C2 exon
chr13:6181274-6181436
Length
70 bp
Sequences
Splice sites
3' ss Seq
GATGTTATTGGTTATCTAAGGTA
3' ss Score
3.12
5' ss Seq
TAGGCGGGT
5' ss Score
-2.2
Exon sequences
Seq C1 exon
AAAAACAGAACCTTGGTAATGACAAGCATGCCTACTGA
Seq A exon
GTAAATGCACCAGGGTTCACGATGCAATTGGAAAGGCTGATGTATTATGGACCGGATGCTGGACAAATAG
Seq C2 exon
AAAACAGGAGGTAGTCTTCAAGGTGATCAGAAATCTGGGTGGTTTTACTGTGGTGGATGATGTGTGTGAGAGCACCTCTCATGTGGTGTCTGGCAGCCCACGGCGGACTGTTAATATCTTGTTAGGCATCGCACGGGGATGCTGGATCCTCTCCTTTGAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000058372_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.359 A=1.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053321=BRCT=FE(16.2=100)
A:
NO
C2:
PF0053321=BRCT=FE(73.0=100)
Main Inclusion Isoform:
ENSDART00000148907fB3783
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACCTTGGTAATGACAAGCATGC
R:
CCGTGCGATGCCTAACAAGAT
Band lengths:
167-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]