DreEX0045574 @ danRer10
Exon Skipping
Gene
ENSDARG00000058372 | mcph1
Description
microcephalin 1 [Source:ZFIN;Acc:ZDB-GENE-060421-6122]
Coordinates
chr13:6188179-6191538:-
Coord C1 exon
chr13:6191482-6191538
Coord A exon
chr13:6190687-6191397
Coord C2 exon
chr13:6188179-6188276
Length
711 bp
Sequences
Splice sites
3' ss Seq
CCACAAGCCTTCTGAATCAGATG
3' ss Score
1.54
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
Exon sequences
Seq C1 exon
AGGAAGAACCATTGGATCCTTTTTCTGTCTCTCACTGTGATGCCTTGAAGAAAAGAG
Seq A exon
ATGCATGTAATCGTGTCAGTGATGAGAGGGGCATTGAAAATCCACTATCTTCAAAATCAGAACTGGGTTTATTGAGCAAAACCAGAGGATCGAAGCAGACCACTCTTAAGAACTTCCTTTATGAAACATCTTCTGAAAGAGAAGAAAGCTCGAATCTCAAACCTGAAACTAAAAACACTGGAATGTCCACAGAGTTATACGCCAGCTCTGAAAAGCCTAGAAGCTTCCTGCCCAAAAGCCTTACAAAAGCAATTCGCAGAAAAAGTGTACATAACTGCAAAGAACTGCTGACCAACTCCGAATGTTTGTATTCCAGCAAGTCGTCTTCAGAAAATGAGCATATCTTTCAAAAAGACGAATCTATGATTGATAAGCCAATGCAGAAACGTCAACGTCGAACATCTGCTGGACTGCATTCAGCCTCGCTTTGTGCTCTACCTAGTAGAGAGATTTCGGACGATGAGTTGTTTGAAGACTTCTTCTCGCCAGCAAACAATGCCTCTAAAAAGAGAGTTGTTTTATTTGATTTGACTTCAGACGCAATGCCAACTTTTGACCTAGAGGACTCAAACAAGAAGGGCAGGCGAAAGTCTTATAAAAAGCAAAAACATGGTATCAAGGACTCAACGGTTGCCTCATCAGACTCTGTGAACACAACGGAGGAGTCAGTTCTTGATGCACGTGAATCAAGATCTGAGCGTGTGGCTGTAG
Seq C2 exon
TTGTAGGGAAAGAAAATAAAAGCACAACAGATGGGATTGAGAGAAGTTCTGAAATGTGTAGCAAAGTGGAGAATATGAAAAAGGACAAATGCTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000058372_MULTIEX3-3/3=2-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.163 A=0.580 C2=0.606
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0053321=BRCT=PU(1.4=3.0)
Main Inclusion Isoform:
ENSDART00000148907fB3785
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]