DreEX0046781 @ danRer10
Exon Skipping
Gene
ENSDARG00000045401 | mllt10
Description
myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 [Source:ZFIN;Acc:ZDB-GENE-041114-176]
Coordinates
chr24:17003747-17013385:+
Coord C1 exon
chr24:17003747-17003826
Coord A exon
chr24:17012621-17012746
Coord C2 exon
chr24:17013331-17013385
Length
126 bp
Sequences
Splice sites
3' ss Seq
CTGCCACTTCATTCCCAAAGATT
3' ss Score
5.83
5' ss Seq
GTGGTATGT
5' ss Score
7.64
Exon sequences
Seq C1 exon
CCTGCTATGGAATTGTCCAGGTCCCCACAGGCCCTTGGTTCTGCAGGAAATGTGAATCACAGGAACGTGCTGCCAGGGTG
Seq A exon
ATTAAAGGGTGGAGGGGGAGAAAGCCGAGCTGGCAGACCCCTGAAGGAGGAGGACAGTCCACCACCTGTAACAAAGAGGAGGAGGACAGCAGACTGAGCAGAAGTTTAAAAACTTTGAACATAGTG
Seq C2 exon
AGGTGCGAGCTGTGTCCCCAGAAAGACGGAGCACTGAAACGGACAGATAATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045401_MULTIEX1-1/7=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.357 C2=0.000
Domain overlap (PFAM):
C1:
PF138311=PHD_2=PD(48.6=66.7),PF138321=zf-HC5HC2H_2=PU(0.1=0.0)
A:
PF138321=zf-HC5HC2H_2=PU(0.1=0.0)
C2:
PF138321=zf-HC5HC2H_2=FE(15.3=100)
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAATTGTCCAGGTCCCCACA
R:
TTATCTGTCCGTTTCAGTGCTCC
Band lengths:
122-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]