DreEX0046788 @ danRer10
Exon Skipping
Gene
ENSDARG00000045401 | mllt10
Description
myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 [Source:ZFIN;Acc:ZDB-GENE-041114-176]
Coordinates
chr24:17064994-17067719:+
Coord C1 exon
chr24:17064994-17065337
Coord A exon
chr24:17067154-17067177
Coord C2 exon
chr24:17067383-17067719
Length
24 bp
Sequences
Splice sites
3' ss Seq
TTGCACTTTTTGGATTATAGCAG
3' ss Score
4.15
5' ss Seq
TAGGTGAGG
5' ss Score
7.65
Exon sequences
Seq C1 exon
GATCCCCAGTCTGGTGGCCATAGTAGCGGAAGCAGCACGTCGTCTCTCTCCACCCCTCCGTCTGCAGCCCACAGCCCGCCCCAGCAGCAGGTGAACGGAGTCGGCATGGCCGGGGTGCCTGTCCAGCCTGGCAATGCCAACTCGTCCCTGCCTGCCATAGCCGGGGTGACGGGTCTGATGGGCGCTCTGCAGGGCAACCACCTGGCCATGAGTGGCATCGTGGGCGCCTTAAACGGAGTAATCCAAACCTCCCAGTCCAGCCTGACCCAGAACAGCAGTCCCCTGCCCCAATCAGCAACAGCTTCCAGCGCATCTCTGTCCATGTCCAGCTCTCTCACTAACAG
Seq A exon
CAGCATGTCTACAACGAAAACTAG
Seq C2 exon
GCTTTTCACTGAACAACACCGGCAGATTCTCCTCCATCAGCATCAACTACAGCAGCTTTTCGGCTCCCAGCAGCCCACACCGGTGAGAGGAACATCAGCATTATTCGTCGCTTTCACCATAAATATAGTACACGATTAACTGCACACATTTACTTCCAATGTTTTTTTCAGATATAAAAATGTCCAAATAATGTGTCATTAACATTACTGTGGGCATTTCGGTAGATTGTTGAGCCTGTCATTCAGTTTATTTACCTATGTAAATATATATTATGTATAGGGCTTATTTAGTCAAGCCCAAAATTATTCACTTTTTTGACTTTAGGGTACTTTTATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045401_MULTIEX2-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=80%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.763 A=0.926 C2=0.365
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCATCTCTGTCCATGTCCAG
R:
GAGCCGAAAAGCTGCTGTAGT
Band lengths:
102-126
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]