DreEX0047703 @ danRer10
Exon Skipping
Gene
ENSDARG00000054903 | mta3
Description
metastasis associated 1 family, member 3 [Source:ZFIN;Acc:ZDB-GENE-030131-6485]
Coordinates
chr12:25184225-25199317:+
Coord C1 exon
chr12:25184225-25184349
Coord A exon
chr12:25188128-25188147
Coord C2 exon
chr12:25192985-25199317
Length
20 bp
Sequences
Splice sites
3' ss Seq
GTCTCGTTTTGTTGCTGCAGCTG
3' ss Score
8.2
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
CAGCATAATGGGAGCAGCACCGGTGGCTCCAGCCTTCGTGGCAGTGGCTTGATGCTCCGTAAGAGACGACCCAACTGGATCGATGCTCCTGATGACAGCTTCTTCCTGGTTTCCCGAGAGACGAG
Seq A exon
CTGTTAGACACCTGATCATG
Seq C2 exon
AAAAGCCAGGAGGATGCTGTCCCGTTCACAGTTGAGAAGAGCATGTAGACAACCATGTGAGCAGATCAGTCTGCGCAGGGTCCCCCAGGGGCCCTCACAGGTACCCATCCTGGCACCTCCTCACCCCAGTTTACGGATGCGCGGCCCAATCGTCATCCATGACTGACCCTCATCTGCATTGTTCCCTCAGCCTATTCTGTCATTTCTCATTTGCTGCTGCTGCTGCTACTGAACAGGCCACAAGCCACTAAACACTTCTTACTCTACTTCCTCTTAAAACCTTTCGCTTCCTCTTGGAGACAATAGGCACCTAATATTAAAGCATTAAGCTATTAAACCACACTAAAATGATGGCAGGATGGCAGCCTAAAGTGTTCAGTATCTCTTAAGTGCTCATTCAATTTCAATACAAGCTCAGCTTACAAACTTTTTATCTTGTAATGACTTATAACGTCATCTCTGGTTTGGTTTAAATCTGTGGCTTTGGGAACTAAACTTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000054903_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (disopred):
C1=0.607 A=1.000 C2=0.909
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSDART00000122665fB3973
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGGCTTGATGCTCCGTAA
R:
AACTGTGAACGGGACAGCATC
Band lengths:
117-137
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]