DreEX0048092 @ danRer10
Exon Skipping
Gene
ENSDARG00000091619 | mvb12ba
Description
multivesicular body subunit 12Ba [Source:ZFIN;Acc:ZDB-GENE-060929-372]
Coordinates
chr5:4724799-4750907:-
Coord C1 exon
chr5:4750705-4750907
Coord A exon
chr5:4750471-4750637
Coord C2 exon
chr5:4724799-4724921
Length
167 bp
Sequences
Splice sites
3' ss Seq
TTTGCTTCTCTGTCCCGCAGCCG
3' ss Score
11.07
5' ss Seq
ACAGTTAAG
5' ss Score
-12.18
Exon sequences
Seq C1 exon
GGTTTTAGAAGCGGCAGTTTCTGAGGACCCCTAAACCACCCTGACGACAAACGGAGAAATGCGCCGTTTAAAATGGATTAATTCTTTACCGGGAACATCAGCAGTCCATCCGTGAGCCGTAAAGACAGACAGAAGAGGAACCAGTGGCGTAAATCTTGTTTAACCGCAGCGTCTGTCTATCACTGTGAAGTGTGTTTGTTGGG
Seq A exon
CCGGGCTTTGTGAAAATCACGCCGCATTCCCTGCCGCTCCGCCCCGCTCTGCTCTCACGCGCTGCCGAGGCTTCTGCGGCCCTCCATACGCCTGCTGCTGCCGCTGTGTGCTGCAGGTCATGAAAAGCTGCTTTTGTCCAAAACGGAAGGACGCAGTGCATTTTACA
Seq C2 exon
AATTCCTCCATGATGCCTGAGGTACGGGACCTTTCAGATGCCCTACCAGAGATGCCCATGGACCCCATCACCGGCGTAGGGGTTGTGGCCTCAAGAAACAGAGCTCCTACCGGCTATGATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000091619-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.105
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF102404=DUF2464=PU(7.7=52.6)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGAGGACCCCTAAACCACC
R:
TCCATGGGCATCTCTGGTAGG
Band lengths:
246-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]