DreEX0048103 @ danRer10
Exon Skipping
Gene
ENSDARG00000079478 | mvb12bb
Description
multivesicular body subunit 12Bb [Source:ZFIN;Acc:ZDB-GENE-080414-2]
Coordinates
chr8:33536885-33559732:-
Coord C1 exon
chr8:33559682-33559732
Coord A exon
chr8:33551084-33551199
Coord C2 exon
chr8:33536885-33536992
Length
116 bp
Sequences
Splice sites
3' ss Seq
CTTTTATTTGTCTCGTGCAGCAG
3' ss Score
9.12
5' ss Seq
ATTGTGAGT
5' ss Score
7.35
Exon sequences
Seq C1 exon
TGTATATCCCAGTAGAGCTGTTCGCTACGCATTCACATTTGGTTCCCTCAG
Seq A exon
CAGGCATGGCCGATCTTCAGGATATCTCCGGTGCTAAATTAGGCGTGCTGCCTGAAGCCGTCAGTGATGTCGGTGTACTGGCATCCAAGAGACAACCTCCAGCCGACTATTATATT
Seq C2 exon
GTTGCACAAACAACAGATGGCTTCGACGCCAACCTGTGGAAGGACAGCATATTCAAATCCAAGGTCACACGCTATCTGTGCTTCAGCCGAGCTGCCACCTCCAAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079478_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF102404=DUF2464=PU(8.1=51.3)
C2:
PF102404=DUF2464=FE(14.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATCCCAGTAGAGCTGTTCGC
R:
ATTTTTGGAGGTGGCAGCTCG
Band lengths:
155-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]