DreEX0048352 @ danRer10
Exon Skipping
Gene
ENSDARG00000009782 | myh11a
Description
myosin, heavy chain 11a, smooth muscle [Source:ZFIN;Acc:ZDB-GENE-050531-1]
Coordinates
chr6:8264326-8271888:-
Coord C1 exon
chr6:8271716-8271888
Coord A exon
chr6:8268527-8268559
Coord C2 exon
chr6:8264326-8265520
Length
33 bp
Sequences
Splice sites
3' ss Seq
ATTGTCTATCTCTGTTGCAGAGG
3' ss Score
9.79
5' ss Seq
CAGGTACCT
5' ss Score
8.16
Exon sequences
Seq C1 exon
GCGGATAAGGCGACCGCTCGAGTCAAGCAGCTGAAGAGGCAGTTGGAGGAGAGCGAGGAAGAGTCTCAGAGAATCACTGCGGCCCGCAGGAAACTGCAGCGAGAGCTGGACGAGGCCACCGAGACTAACGATGCCATGAGCCGTGAGGTCAATTCCCTCAAGAGCAAACTCAG
Seq A exon
AGGCAATCCTGAACCCACACAGTGACTATGCAG
Seq C2 exon
GCGAGGCAATGAGACGTCATCCTTCAGCAGCACACCGAGACGTACTGGAGGAGGAGGCCGACGGGGAATCATCGACAGCTCGGATGCTGCGGAGGATGATGCCGACATGCAGAGCGATTACAACGGAACCAAATCTAATGAATAAACATCACCTTTCAAAATACCTTCTAGTCAAAAAACCAAAGTCTACTTTTACATGGGTCATTATTTAGTTTCTAATATATTTGTTTGACCGCAACAAAGCACTGCGCTCTGACTTGGTATTTGGCCAGTCATGATTTCTATATTTTTATTTTATTTTATTAGCAGTTATAGTTTTGTTAGCTCATTTATCACAACCCCCAGTTTTTACATTGATCGTTGTGGATGCAGACCTTCTAAAATTTCATCTAAACAAGTGTTTTGTTTATTAAAAACCTTTTTCTTAGTTAAAAACCTGGTGGTTTTTAGAGTTTACCTTCACTCAGATTTGAGGTAAAATATCTTCTTTGTTTTATTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000009782_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(6.7=100)
A:
PF0157614=Myosin_tail_1=PD(0.1=11.1)
C2:
PF0157614=Myosin_tail_1=PD(0.1=2.0)
Main Inclusion Isoform:
ENSDART00000041142fB4032
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCCACCGAGACTAACGAT
R:
CTCCTCCTCCAGTACGTCTCG
Band lengths:
118-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]