DreEX0048370 @ danRer10
Exon Skipping
Gene
ENSDARG00000073732 | myh14
Description
myosin, heavy chain 14, non-muscle [Source:ZFIN;Acc:ZDB-GENE-100921-1]
Coordinates
chr16:16969063-16973541:+
Coord C1 exon
chr16:16969063-16969180
Coord A exon
chr16:16973239-16973286
Coord C2 exon
chr16:16973530-16973541
Length
48 bp
Sequences
Splice sites
3' ss Seq
TCCTCTGCTGTGTGTTGAAGATG
3' ss Score
7.4
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
AGGGGAATCCGGTGCAGGAAAAACAGAAAACACCAAAAAAGTGATTCAGTATTTGGCACATGTGGCATCTTCACACAAGTCTGGTACTCTGGGGCGACCCAAAGACACTGTTGTACAG
Seq A exon
ATGGATGGTACTCGCTCTCTGGGTCGTGGCAGTAGCGCTGTGAACAGG
Seq C2 exon
ACCGTGCAGTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000073732_MULTIEX1-1/2=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.267 A=0.250 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.3=100)
A:
PF0006316=Myosin_head=FE(2.0=100)
C2:
PF0006316=Myosin_head=FE(0.4=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]