DreEX0048687 @ danRer10
Exon Skipping
Gene
ENSDARG00000010186 | myo3a
Description
myosin IIIA [Source:ZFIN;Acc:ZDB-GENE-041026-4]
Coordinates
chr24:6189168-6190614:-
Coord C1 exon
chr24:6190459-6190614
Coord A exon
chr24:6190228-6190263
Coord C2 exon
chr24:6189168-6189267
Length
36 bp
Sequences
Splice sites
3' ss Seq
CTTTATTTCTATTGTTTAAGCCT
3' ss Score
5.02
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
GTGTCTGATAAAGGATTTTGAGCTCAGGCCCAATGTGCTTGACCTTCTTCAGCATGTCTTCATCAAACAGATTGTGGGCCGAGAGAAGACGCTGCAGAAGCAGCTGATGGAGCTAATCGACCTCAACCAGCAAATGGGCATCATTGAGAAAACAAG
Seq A exon
CCTTCTCGGAAAATCTGACAGGGACAGTGACTCCAG
Seq C2 exon
GCATGAGCGTATCCACACCAAGAAAAACAGCTACATGAAGTCTCAAAGTCAAACGTGTGACGACGCTGATGATCTGGCAACCCTAGAGGTTCTAGATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010186_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.821 C2=0.529
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PD(7.9=39.6)
A:
NO
C2:
PF0006316=Myosin_head=PU(1.5=32.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTAATCGACCTCAACCAGCA
R:
CCAGATCATCAGCGTCGTCAC
Band lengths:
122-158
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]