DreEX0048697 @ danRer10
Exon Skipping
Gene
ENSDARG00000006892 | myo3b
Description
myosin IIIB [Source:ZFIN;Acc:ZDB-GENE-070706-2]
Coordinates
chr9:3893112-3895145:-
Coord C1 exon
chr9:3894964-3895145
Coord A exon
chr9:3893866-3893886
Coord C2 exon
chr9:3893112-3893246
Length
21 bp
Sequences
Splice sites
3' ss Seq
TGTTCTCTGGCTTGTCTCAGAAT
3' ss Score
7.74
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
GGTCTTTCTATGGACTGTATCCCTACAAGTCAAGCATGATTGGTCTCGAGTCGCTGGCGGACCCGTCTTCTGATTGGGACATTGTGGAAACGATTGGAAAAGGAACCTATGGCAAGGTCTACAAAGTCATCAATAAGAAAGATGGAAGTCAAGCCGCCGTGAAAGTTTTGGATCCCATTAAT
Seq A exon
AATCCCAGTCACACTAACAGA
Seq C2 exon
GATGTGGACGAGGAAATTGAAGCAGAATACAACATCCTTCGCTCCTTGTCCAACCATCCCAATGTTGTGAAGTTCTTTGGCATGTTCTACAAAGCAGATGAGCTCTCCGGAGGGCAGCTATGGCTTGTTTTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000006892_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.429 C2=0.007
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PU(13.1=71.4)
A:
PF0006920=Pkinase=FE(2.2=100)
C2:
PF0006920=Pkinase=FE(16.5=100)
Main Inclusion Isoform:
ENSDART00000010378fB4063
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGATGGAAGTCAAGCCGCC
R:
ATGGTTGGACAAGGAGCGAAG
Band lengths:
102-123
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]