DreEX0048778 @ danRer10
Exon Skipping
Gene
ENSDARG00000044632 | myo7ab
Description
myosin VIIAb [Source:ZFIN;Acc:ZDB-GENE-091110-4]
Coordinates
chr21:22242643-22243952:+
Coord C1 exon
chr21:22242643-22242749
Coord A exon
chr21:22243141-22243182
Coord C2 exon
chr21:22243815-22243952
Length
42 bp
Sequences
Splice sites
3' ss Seq
ACCTCATGTTTTGGCCTCAGTTT
3' ss Score
7.75
5' ss Seq
AAGGTAATC
5' ss Score
7.46
Exon sequences
Seq C1 exon
GTTTCCTGGAGAAGAACCGAGACAGTCTCCACAGTGACATCATCCAACTCGTCCATTCATCCAAAAACAAGTTCATCAAGCAGATCTTCCAAGCTGATGTTGCCATG
Seq A exon
TTTCTGTGTGGCTATATGGAGCCCACTGCAACCCTTCAAAAG
Seq C2 exon
GGAATGGAGACGAGGAAACGCTCGCCGACTCTCAGCAGTCAGTTTAAGCGCTCACTGGAACTGCTCATGAGGACGCTGAGCGTCTGTCAGCCTTTCTTTGTGCGCTGCATCAAACCCAACGAGCTCAAAAAGCCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044632_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.133 C2=0.064
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.3=100)
A:
PF0006316=Myosin_head=FE(2.1=100)
C2:
PF0006316=Myosin_head=FE(7.0=100)
Main Inclusion Isoform:
ENSDART00000148019fB4072
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCCAAGCTGATGTTGCCA
R:
GATGCAGCGCACAAAGAAAGG
Band lengths:
134-176
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]