DreEX0048779 @ danRer10
Exon Skipping
Gene
ENSDARG00000044632 | myo7ab
Description
myosin VIIAb [Source:ZFIN;Acc:ZDB-GENE-091110-4]
Coordinates
chr21:22248842-22251444:+
Coord C1 exon
chr21:22248842-22249018
Coord A exon
chr21:22249112-22249150
Coord C2 exon
chr21:22251355-22251444
Length
39 bp
Sequences
Splice sites
3' ss Seq
GTTCCTGTTTATACTTACAGAAA
3' ss Score
7.22
5' ss Seq
TCAGTAAGC
5' ss Score
5.59
Exon sequences
Seq C1 exon
GCTGCTCTGGCTGTGTGGATCACTGTGTTGAGGTTTATGGGAGATCTTCCAGAACCCAAATATCATATCAGTATTAGTGATGGCAGTGAGAAGATACCAGTTATGACTAAAATCTATGAGACGTTGGGAAAGAGAACCTACAAAAGGGAGCTGCAGGCCTTGCAGGTGGATGAGGAG
Seq A exon
AAACATGAAGTCCACTCCAAAGACACTTATACTCTATCA
Seq C2 exon
AGTTCCACAACTGACATCCAGAAGAGAAACAGTGTTCGTCATAAGCTGGTGTCCCTCACATTAAAGAAGAAATCAAAGCTTACAGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044632_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.075 A=0.571 C2=0.179
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSDART00000148019fB4073
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGACGTTGGGAAAGAGAACC
R:
AGGGACACCAGCTTATGACGA
Band lengths:
117-156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]