DreEX0050293 @ danRer10
Exon Skipping
Gene
ENSDARG00000057317 | nexn
Description
nexilin (F actin binding protein) [Source:ZFIN;Acc:ZDB-GENE-041114-92]
Coordinates
chr8:18483792-18487560:-
Coord C1 exon
chr8:18487369-18487560
Coord A exon
chr8:18486398-18486445
Coord C2 exon
chr8:18483792-18483986
Length
48 bp
Sequences
Splice sites
3' ss Seq
TTTCACGTTGTGTCTTTAAGAGC
3' ss Score
7.17
5' ss Seq
GAAGTAAGA
5' ss Score
6.42
Exon sequences
Seq C1 exon
GTTATAAATAGTGACGATGACATCCTGCTGGCCATGATCAACTCAGACGGGGCCAAACCCGGGAAGTTGGCCATTAGCTTTGAGGATTTGGAAAGACAGAGACAAGAAGAGGAGCAGAAACGCAAAGAGGAGGAGGCCAAGCGACGCCTGGAAGAGGAGAAAAGACTCTTCGCTGAAGCTCGAAAGAGCATG
Seq A exon
AGCCCTGGAGTGGATCAGGATAATATGACTGGATGTGGAGATAAAGAA
Seq C2 exon
GTGCTGGATGAGGATGAAACTCTGGTGCGCACGGAGTCACAGGAAGGATTGCACCCAGGAAAGCTTGAGATCAACTTTGAGGAGATGCTGAAGATGAAGGAGGAGACAGAGCGCAAGCGCAAGCAGGAGGCCAGACGGCAGAAAATGGAGATGGAGAAGAAAGAGTTTGAACAGTTGAGACAAGAGATGGGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057317_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.938 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGAAACGCAAAGAGGAGG
R:
GCAATCCTTCCTGTGACTCCG
Band lengths:
132-180
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]