DreEX0051134 @ danRer10
Exon Skipping
Gene
ENSDARG00000043130 | notch2
Description
notch 2 [Source:ZFIN;Acc:ZDB-GENE-000329-4]
Coordinates
chr8:19574398-19576543:+
Coord C1 exon
chr8:19574398-19574510
Coord A exon
chr8:19575866-19575879
Coord C2 exon
chr8:19576032-19576543
Length
14 bp
Sequences
Splice sites
3' ss Seq
TGCTTTCACTAAACACTAAGGCT
3' ss Score
0.39
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
GTCAACGTTGTGAGTCAATGGTTGATCTGTGCCAGTCCAAGCCATGCCACAACAATGGTAGATGCACTACGAACTCCAGCTCTGTACACGGATACATCTGTACATGCCCACCT
Seq A exon
GCTGCATAAATCAG
Seq C2 exon
GGTTTCTCTGGCTTTAACTGTGGCAATTATGAGATGTTCCCATGTGCCAGTTTACGCTGTCTGAATGGTGGACAGTGTGTGGAGATAAAGAGCCGCCCTCAGTGCCACTGCCCAGTGGGTTTTACTGGAACACACTGTGAGATGTTAACAAACCATTGCGTGTGTCAAAATGGTGGCACCTGCATGCCAGATGAGTCCAACAAGTTTAGCTGCCGGTGTCCACCAGGGTTTAGCGGGGAGACCTGTCAGGAGACTCCACCTTCTTGCCCTTATCCGGATTGCGAACAGCGGGCTGGAGACAAAGTATGTGACCTGCGTTGTAAGAACCCGGAGTGTGACTGGGATGGAAGTGACTGTACGCTCCACTGGGACAAACCCTGGAAGAACTGCAAAGCCTCAGTGTCCTGCCCAGACTTATTTCATAACGGCCGCTGTGACCCAGAGTGCAACAATGCAGGCTGCCTATTCGACAGCTTTGAATGCGACAAACATTCATCGGTGGGAATTTGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000043130-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=PD(14.6=15.8),PF0000822=EGF=PU(81.8=71.1)
A:
NO
C2:
PF0000822=EGF=PD(12.1=2.3),PF0000822=EGF=WD(100=18.1),PF0000822=EGF=WD(100=20.5),PF0006612=Notch=WD(100=21.6),PF0006612=Notch=WD(100=22.2),PF0006612=Notch=PU(15.8=3.5)
Main Inclusion Isoform:
ENSDART00000123104fB4295
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCACTACGAACTCCAGCTCT
R:
GCGTAAACTGGCACATGGGAA
Band lengths:
108-122
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]