DreEX0051459 @ danRer10
Exon Skipping
Gene
ENSDARG00000055854 | nr4a3
Description
nuclear receptor subfamily 4, group A, member 3 [Source:ZFIN;Acc:ZDB-GENE-070824-4]
Coordinates
chr16:27405401-27411599:+
Coord C1 exon
chr16:27405401-27405553
Coord A exon
chr16:27406359-27406440
Coord C2 exon
chr16:27410755-27411599
Length
82 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTGTTTGTTTGTTAGATC
3' ss Score
8.92
5' ss Seq
GAGGTTAGA
5' ss Score
4.15
Exon sequences
Seq C1 exon
ACACCGGTTCGGAAGAGCGCCTGCAGCCCAGGTCTGGGTCCCGGCTACCGGATACCTCACCCGCCGCGTGTGCTGAAGCAGCCCCGAACCCCAGACGCGTGCAGCCTCCACTCGAAAAACCGACCACGATTCAGCGAGCAAAAGGCCAATCAG
Seq A exon
ATCTATGGCACTCTGACAATGAACAAGCGATCACAGTTATTGGAACAGCTGCATTTTGTCCATCTAAAATGCACACCTCGAG
Seq C2 exon
TAGACATGCCCTGCGTTCAGGCCCAGTACGGCCCTCCACCCCATGGGTCCAGCTACTCTGCCCAGTCCTTTGGCTACCATGGTGACTACAGCGCTGACCTCATGGCGACAGACTACACAAAGTGTGAGCTCAGTGGGGGAGAGATCTCAGCGGCGGCCGCCACCACTTCCTTACCCAGTTTTAATGTGTTTGTGGAGGGCGGCTTCGAGCCCAAACCTTCCTGTCTGTATCAACTCCCTCCTCAACGCCCTATCATCAAGAAAGAGGAGGAGTCCTTCCCACCCATGGCACCATCTGACGAAGCAATACCTGGGAGCTCCATGTACTTTAAACAGTCGCCCCCTTCGACGCCCCCTACGCCGCTTCACCCCGGCCCACCCAGCAGCTCTTTCTTGTGGGATGAGCACAGTCTTCCCCCAGTGCCCCAACCTTGCCTGATTGAAGGCCCGCTGAAGAGCCCTCGCTTCCCTCATTTCTACGAGCAGACGGTGCCACCCTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000055854_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.627 A=0.071 C2=0.501
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0010513=zf-C4=PU(38.6=9.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTCGAAAAACCGACCACGA
R:
CCCCACTGAGCTCACACTTTG
Band lengths:
183-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]