DreEX0051491 @ danRer10
Exon Skipping
Gene
ENSDARG00000009341 | nrap
Description
nebulin-related anchoring protein [Source:ZFIN;Acc:ZDB-GENE-060616-224]
Coordinates
chr12:30486947-30487986:+
Coord C1 exon
chr12:30486947-30487051
Coord A exon
chr12:30487441-30487548
Coord C2 exon
chr12:30487675-30487986
Length
108 bp
Sequences
Splice sites
3' ss Seq
ATTGGGTTTCTGGTTTTTAGAAA
3' ss Score
6.89
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
TTGGCATACAAGGCAGGCACAGAACAGACAATGCACCAGTACACTATAAGCAAAGATGAGCCTCTCTTCAAGCAAGCCAAAGCTAACGCAGAGCTTCTCAGTGAG
Seq A exon
AAAACATATAAGAGTAGTTGGGATGAACAGAGGGAGAAGGGCTTTGAGCTAGGCTTGGACACACTTTCGATTCTCTCTGCCAAAGCAACAAGAGATCTCGCCAGTGAT
Seq C2 exon
GTGAAGTACAAGCAAAAATATGAAATGACAAAAGGGAAGATGATTGGCGTGAAGACTGTGGCAGACGATTCTCAAATGGCCCACTCGACCCATGCTACCAAACTCCACAGTGACCTCAACTACAAGAAACAGTATGAGGACACCAAGACCAAACACAGCGCCTCACTCGATATGTTGACCCTCACCCATGCCAAGAAAGCCCAGGAGCTGGCCACAGAGACAAACTACAAAACATTCTTGCACAAGTACACCATCCTGCCCAGTGATATGAAACTGGAATGGGCCAAGAAAGCCTACGGCTTGCAGAGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000009341_MULTIEX1-3/4=2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.057 A=0.028 C2=0.058
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(57.1=45.7)
A:
PF0088013=Nebulin=PD(35.7=27.8),PF0088013=Nebulin=PU(55.2=44.4)
C2:
PF0088013=Nebulin=PD(37.9=10.6),PF0088013=Nebulin=WD(100=27.9),PF0088013=Nebulin=PU(53.6=14.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCTCTTCAAGCAAGCCAA
R:
CTTTCTTGGCATGGGTGAGGG
Band lengths:
245-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]