DreEX0051728 @ danRer10
Exon Skipping
Gene
ENSDARG00000007654 | nsfa
Description
N-ethylmaleimide-sensitive factor a [Source:ZFIN;Acc:ZDB-GENE-030616-37]
Coordinates
chr3:34637481-34642565:-
Coord C1 exon
chr3:34642510-34642565
Coord A exon
chr3:34642343-34642394
Coord C2 exon
chr3:34637481-34638386
Length
52 bp
Sequences
Splice sites
3' ss Seq
AAGAGTGTTTTCAATTTCAGGCT
3' ss Score
6.83
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
Exon sequences
Seq C1 exon
ATGGATCAGGAGTACAGAGTTAGCAAGTTCCTTTCTCTACTCAAAGATGAGGGAGC
Seq A exon
GCTGGATGAAAACAATCACATTCGAATTTAACTCTACCGGTGAAAAGCAATG
Seq C2 exon
AGACCGCGGCTTCTTCGAGTAACAGAAGACAGGAGACGCTTTCAACCTTCTGCATGTTCCCGAAAAAAAAAAAAAAAACTCCAGCCAAACTCCACCTTCACAAATGTAACAGATATAACCTGACGGAGATCACACTTCATATCCAACCAATATCAAATATCGTCTTGTGCTTTGTGTAAGACTTCTGTACGCTGTTTGTTTACATTAAATATACGTTCCAATCTGCTCAAAGAAAGCCATGAAGATGTAAAGATTAAAAAAATAATTGTATATATGCTGCTGGATGCAAAACATATATTGTGAGACTATATCATGCAACCTGAATCTCAAAAGTATGATATAAGGAAGCTGTTAGTGTGTGTATTTACAGTAGTGAAGATGAGCCGTGCTGTTCGTGGTGTGCAAACGCTGAAGCCCTACCTTTGTGATTGTGTTGTGGTAACACAAGAAAACGACATATAGATCACAGTGTTATTCGATATTGTACATAGGTTTAAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007654_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGTACAGAGTTAGCAAGTTCCT
R:
GAAGGTGGAGTTTGGCTGGAG
Band lengths:
148-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]