DreEX0051732 @ danRer10
Exon Skipping
Gene
ENSDARG00000038991 | nsfb
Description
N-ethylmaleimide-sensitive factor b [Source:ZFIN;Acc:ZDB-GENE-050808-1]
Coordinates
chr12:22229125-22230791:-
Coord C1 exon
chr12:22230692-22230791
Coord A exon
chr12:22229474-22229486
Coord C2 exon
chr12:22229125-22229164
Length
13 bp
Sequences
Splice sites
3' ss Seq
ACCTATTAACATGAGAGCAGCAA
3' ss Score
-4.97
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
GCATTTGACTATTAAAACCACTCCAACTCAGAAATTTGTTTTCACTGTGAGAACTCATCCAAGCGTGGTGCCAGGAACCATTGCCTTCAGTCTACCTCAG
Seq A exon
CAAGACACCTCAG
Seq C2 exon
AGAAAATGGGCTGGACTCTCTCTAAACCAAGATGTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000038991-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.066 A=0.200 C2=0.071
Domain overlap (PFAM):
C1:
PF0235913=CDC48_N=FE(40.2=100)
A:
PF0235913=CDC48_N=PD(4.5=60.0)
C2:
PF0235913=CDC48_N=FE(15.9=100)
Main Inclusion Isoform:
ENSDART00000159036fB4340
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGAGAACTCATCCAAGCGTG
R:
CCACATCTTGGTTTAGAGAGAGTCC
Band lengths:
92-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]