DreEX0051891 @ danRer10
Exon Skipping
Gene
ENSDARG00000022399 | ntmt1
Description
N-terminal Xaa-Pro-Lys N-methyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2055]
Coordinates
chr5:31902953-31905123:-
Coord C1 exon
chr5:31905081-31905123
Coord A exon
chr5:31904889-31904956
Coord C2 exon
chr5:31902953-31903127
Length
68 bp
Sequences
Splice sites
3' ss Seq
TTTGTCAACACCAAATATAGAAA
3' ss Score
1.08
5' ss Seq
CTAGTAAGT
5' ss Score
8.78
Exon sequences
Seq C1 exon
GCGATTGCAAGAAGCGGCAGTCAGCGAGAGCACGAAAGCAAAG
Seq A exon
AAACAGGACAAGACACCTTCAAAGACAGGAGGACCACGTGTAGGAGCGTGTTTGACCGAGTAAATCTA
Seq C2 exon
GAGTTGCACAAAGATGGAAGACTGTTTGATAGAAGACCAAACGTCCTTTTACTCAAAGGCAGAGCACTACTGGAAGGACGTCCCGCCCACTGTGGATGGAATGCTGGGAGGTTATGGCAGCATCTCCAGTATTGACATTAACGGCTCAAAAAAGTTTCTTCAGAAATTCCTTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000022399_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF058917=Methyltransf_PK=PU(21.3=85.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGAAGCGGCAGTCAGC
R:
ACTGGAGATGCTGCCATAACC
Band lengths:
167-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]