DreEX0051903 @ danRer10
Exon Skipping
Gene
ENSDARG00000076748 | ntn2
Description
netrin 2 [Source:ZFIN;Acc:ZDB-GENE-050310-2]
Coordinates
chr24:38867506-38899844:-
Coord C1 exon
chr24:38899675-38899844
Coord A exon
chr24:38873419-38873588
Coord C2 exon
chr24:38867506-38868747
Length
170 bp
Sequences
Splice sites
3' ss Seq
TTCTCATTAACTCTAAACAGCGA
3' ss Score
6.05
5' ss Seq
GAGGTAGTC
5' ss Score
4.52
Exon sequences
Seq C1 exon
CGTGTGTGTGCGCGCGTGTCAGTGTGTTTCTGTCTCATGAACGGAACTGACCGCTGCTCTGTCTGTGAGTTACATTCACCAGCAGACAACAGGACTAAATCACGAGCGATCTGGATTTATTTCACGCACATCTGCGCCTGAATGAGCTTTGGCGGGATTCAGAAATTCAG
Seq A exon
CGAGCGGATCTCATCAGATTCCCTCCCGGCTGATCATATGTGTGTGGAGCTGCAGACTGAAGCATCAGGAGAGTTTGAGAGTATCGGGTTTTCTGCGTTCGCTGTCTGTCTGGATAACGGCACATAGGATGTGGAATGGACTGTGACCGCAGACTCCTCCAGCAGTAGAG
Seq C2 exon
ACGCACGCTGCCGAGGGTCGATTTTGGGAAAGTCGTCTATCTCCAAGACATTTTTCTGGCTGGATTGTCTTTCCTGAGATATCGCACATACGCCAGACTGTGTCAGTCTAAGGAGACTCCACAACCATATTTGTTTATTTGGCTTCCCTTCTCTCTCTGCCATCCATCTGCATACGTTCCTCCCCATCACATCCATCATCCCCTCCCGTGACACCATGTGGAGATTTCAGACTTTGCTTTCTATGCTCACTGTGTTCCAAGCCTCCAGCCACAGCCCCAATCCATTCAGCGGGCCTCAAGTGACTCCGACAGACCCCTGTTATGAGGAGACGGGTGCTGCCCGCCGGTGCATCCCAGAGTTCATAAACGCAGCATTTGGGCAGGAGGTCAGTGTGTCGAGTGTTTGTGGGCGACCAGTGTCTAGATCATGTAGTTTAGTGGAGCGTGATGACCGTCCCGCCGTTCGCACATGCCAAATCTGCGATGCATCTGATCCCCGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076748_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.103
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0005512=Laminin_N=WD(100=70.6),PF0005319=Laminin_EGF=WD(100=15.7)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGCGCCTGAATGAGCTTT
R:
GGGAGGGGATGATGGATGTGA
Band lengths:
248-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]